Here's a good deal. Not sure of the quality of scans, but it's certainly worth a look.
http://www.amazon.com/gp/product/B00...pf_rd_i=507846
Star Trek: The Complete Comic Book Collection - $6.99
Includes all issues from 1967 - 2002, including every annual, all articles and advertisements--over 500 issues. Western (Gold Label), Marvel, DC, Malibu, and Wildstorm are all included. All content in printable, user-friendly PDF format. Series include Star Trek, Star Trek: The Next Generation, Star Trek: Voyager, and Star Trek: Deep Space Nine.
Contents:
GOLD KEY / WESTERN COMICS
Star Trek
Monthly issues #1-61
Enterprise Logs. Volumes #1 to #4
Star Trek Oynabrite #11357 and #11358
Dan Curtis Give-Away #2 and 6
PETER PAN / POWER RECORDS
Star Trek comic / record sets
Passage to Moauv
The Crier in Emptiness
Dinosaur Planet
The Robot Masters
A Mirror For Futility
The Time Stealer
DC COMICS
Star Trek (First Series)
Monthly issues #1-56 (issue #6 has 2 covers)
Annuals #1-3
Who's Who in Star Trek #1-2
Star Trek III: The Search for Spock film adaptation
Star Trek IV: The Voyage Home film adaptation
Star Trek (Second Series)
Monthly #1-80
Annuals #1-6
Star Trek V: The Final Frontier film adaptation
Star Trek VI: The Undiscovered Country film adaptation (2 covers)
The Ashes of Eden novel adaptation
Star Trek Specials #1-3
Star Trek - The Modala Imperative miniseries #1-4
Debt of Honor hardcover graphic novel (2 covers)
Star Trek: The Next Generation
Limited Miniseries #1-6
Monthly issues #1-80
Annuals #1-6
The Series Finale: All Good Things episode adaptation
Star Trek: Generators film adaptation (2 covers)
ST: TNG Specials #1-3
ST: TNG - The Modala Imperative miniseries #1-4
ST: TNG - III Wind miniseries #1-4
ST: TNG - Shadowheart miniseries #1-4
DC COMICS AND MALIBU COMICS
Crossover Event
Star Trek: The Next Generation / Deep Space Nine Ashcan Edition
Star Trek: The Next Generation / Deep Space Nine crossover
Miniseries #1-4
MALIBU COMICS
Star Trek: Deep Space Nine
Edition Preview Ashcans #1A and #1B
Monthly Series #1-32 (4 covers for issue #1)
Terok Nor Special #0
Worf Special #0
Deep Space Nine Special #1
The Looking Glass War Annual #1
Ultimate Annual #1
Hearts and Minds miniseries #1-4 (issue #1-2 covers)
Lightstorm Special #1
The Maquls, Soldier of Peace miniseries #1-3
Star Trek: Deep Space Nine (continued)
Celebrity Series: Blood & Honor
Celebrity Series: The Rules of Acquisition Oplomacy
MARVEL COMICS
Star Trek (1980 series)
Monthly issues #1-18
Marvel Super Special #157Star Trek: The Motion Picture film adaptation
The Full-Color Comics Version of ST:TMP [paperback reprint book]
Star Trek: The Further Adventures of the Starship Enterprise [paperback reprint book]
Star Trek: Collector's Preview #1-2
Star Trek: Early Voyages
Monthly issues #1-17
Star Trek Unlimited
Monthly issues #1-10
Star Trek: Deep Space Nine
Monthly issues #1-15
Star Trek: Voyager
Monthly issues #1-15
Splashdown miniseries #1-4
Star Trek: Starfleet Academy
Monthly issue #1-19 [issue #1B printed in English and Klingon Language Editions]
Star Trek: Telepathy War
Miniseries #1-5
Reality's End Special
Star Trek: Untold Voyages
Limited Miniseries #1-5
Star Trek: First Contact film adaptation (2 covers)
Star Trek: Mirror Mirror one-shot
Star Trek: Operation Assimilation one-shot
Riker Special? The Enemy of My Enemy one-shot
WILDSTORM COMICS
Star Trek
All of Me one-shot
Enter the Wolves one-shot
Star Trek: The Next Generation
Perchance to Dream miniseries #1-4
Embrace the Wolf one-shot
The killing Shadows miniseries #1-4
The Gorn Crisis hardcover graphic novel
Forgiveness hardcover graphic novel
Star Trek: The Next Generation / Deep Space Nine
Divided We Fall miniseries #1-4
Star Trek: Deep Space Nine
N-Vector miniseries #1-4
Star Trek: Voyager
False Colors one-shot (2 covers)
Elite Force one-shot
Elite Force Special Collector's Edition
Avalon Rising one-shot
Planet Killer miniseries #1-3
Star Trek: New Frontier
Double Time one-shot
Star Trek: Special #1
(whew!)